Publications
						
					2025
								Zampini M., Riva E., Lanino L., Sauta E., Dos Reis R.A., Ejarque R.M.A., Maggioni G., Termanini A., Merlotti A., Campagna A., Dall'Olio L., Kulasekararaj A., Calvi M., Di Vito C., Bonometti A., Rahal D., Croci G., Boveri E., Gianelli U., Ponzoni M., Caselli R., Albertazzi S., Todisco G., Ubezio M., Crisafulli L., Frigo A., Lugli E., Mosca E., Acha P., Ghisletti S., Nicassio F., Santoro A., Diez-Campelo M., Sole F., Ades L., Platzbecker U., Santini V., Fenaux P., Haferlach T., Sallman D., Garcia-Manero G., Mavilio D., Remondini D., Castellani G., D'Amico S., Zeidan A.M., Komrokji R., Kordasti S., Ficara F., Porta M.G.D.
								Characterization and Clinical Implications of p53 Dysfunction in Patients With Myelodysplastic Syndromes
								Journal of Clinical Oncology
								
							2025
								Finocchiaro C., Giuliani B., Tria G., Mimani S., Ugolini C., Marzi M.J., Nicassio F.
								Dissecting the contribution of non-coding elements to Breast Cancer plasticity
								RNA Society Annual Meeting 2025
								
							
								
								
								    
										Poster
									
								
								
									Conference
								
								
							
						2024
								Mulroney L., Coscujuela-Tarrero L., Maragno P., Rubolino C., Maestri S., Furlan M., Marzi M.J., Fitzgerald T., Leonardi T., Pelizzola M., Birney E., Nicassio F.
								A comprehensive survey of RNA modifications in a human transcriptome
								bioRxiv
								
							2024
								Marzi M.J., Rubolino C., D'Onghia M., Tordonato C., Giuliani B., Nicassio F.
								AEGEAN AWARD: Canonical and non-canonical Target-Directed MicroRNA Degradation controls cell fitness and transcriptional plasticity in breast cancer
								5th International Aegean Conference on the Long and the Short of Non-Coding RNAs
								
							
								
								
								    
										Poster
									
								
								
									Conference
								
								
							
						2024
								Finocchiaro C., Giuliani B., Marzi M.J., Nicassio F.
								A systematic interrogation of lncRNAs in the context of triple-negative breast cancer
								ABCD 2024 RNA Biology and Systems Medicine
								
							
								
								
								    
										Poster
									
								
								
									Conference
								
								
							
						2024
								Maestri S., Furlan M., Mulroney L., Tarrero L.C., Ugolini C., Pozza F.D., Leonardi T., Birney E., Nicassio F., Pelizzola M.
								Benchmarking of computational methods for m6A profiling with Nanopore direct RNA sequencing
								Briefings in Bioinformatics, vol. 25, (no. 2)
								
							2024
								Yip C.W., Parr C., Takahashi H., Yasuzawa K., Valentine M., Nishiyori-Sueki H., Ugolini C., Ranzani V., Murata M., Kato M., Kang W., Yip W.H., Shibayama Y., Sim A.D., Chen Y., Shu X., Moody J.D., Umarov R., Chang J., Pandolfini L., Kawashima T., Tagami M., Nobusada T., Kouno T., Gonzalez C.A., Albanese R., Dossena R., Haberman N., Ozaki K., Kasukawa T., Lenhard B., Frith M., Bodega B., Nicassio F., Calviello L., Bienko M., Legnini I., Hilgers V., Gustincich S., Goeke J., Lecellier C.H., Shin J.W., Hon C., Carninci P.
								CFC-seq: identification of full-length capped RNAs unveil enhancer-derived transcription.
								bioRxiv
								
							
								
								
								    
										Article
									
								
								
									Journal
								
								
							
						2024
								Zerbib J., Ippolito M.R., Eliezer Y., De Feudis G., Reuveni E., Savir Kadmon A., Martin S., Vigano S., Leor G., Berstler J., Muenzner J., Mulleder M., Campagnolo E.M., Shulman E.D., Chang T., Rubolino C., Laue K., Cohen-Sharir Y., Scorzoni S., Taglietti S., Ratti A., Stossel C., Golan T., Nicassio F., Ruppin E., Ralser M., Vazquez F., Ben-David U., Santaguida S.
								Human aneuploid cells depend on the RAF/MEK/ERK pathway for overcoming increased DNA damage
								Nature Communications, vol. 15, (no. 1)
								
							2024
								Ippolito M.R., Zerbib J., Eliezer Y., Reuveni E., Vigano S., De Feudis G., Shulman E.D., Kadmon A.S., Slutsky R., Chang T., Campagnolo E.M., Taglietti S., Scorzoni S., Gianotti S., Martin S., Muenzner J., Mulleder M., Rozenblum N., Rubolino C., Ben-Yishay T., Laue K., Cohen-Sharir Y., Vigorito I., Nicassio F., Ruppin E., Ralser M., Vazquez F., Santaguida S., Ben-David U.
								Increased RNA and Protein Degradation Is Required for Counteracting Transcriptional Burden and Proteotoxic Stress in Human Aneuploid Cells
								Cancer Discovery, vol. 14, (no. 12), pp. 2532-2553
								
							2024
								Pirra Piscazzi M., Marzi M.J., Nicassio F.
								Multi-omic lineage tracing predicts the molecular drivers of cancer stem cells in Triple-Negative Breast Cancer evolution
								
								
							
								
								
								    
										PhD Thesis
									
								
								
									Book
								
								
							
						2024
								Nadalin F., Marzi M.J., Pirra Piscazzi M., Fuentes-Bravo P., Procaccia S., Climent M., Bonetti P., Rubolino C., Giuliani B., Papatheodorou I., Marioni J.C., Nicassio F.
								Multi-omic lineage tracing predicts the transcriptional, epigenetic and genetic determinants of cancer evolution
								Nature Communications, vol. 15, (no. 1)
								
							2024
								Ugolini C., Leonardi T., Marzi M.J., Nicassio F.
								NANOPORE SEQUENCING AS A NEW TOOL TO EXPLORE COMPLEX TRANSCRIPTOMES
								
								
							
								
								
								    
										PhD Thesis
									
								
								
									Book
								
								
							
						2024
								Champroux A., Tang Y., Dickson D.A., Meng A., Harrington A., Liaw L., Marzi M., Nicassio F., Schlaeger T.M., Feig L.A.
								Transmission of reduced levels of miR-34/449 from sperm to preimplantation embryos is a key step in the transgenerational epigenetic inheritance of the effects of paternal chronic social instability stress
								Epigenetics, vol. 19, (no. 1)
								
							2023
								Giambruno R., Zacco E., Ugolini C., Vandelli A., Mulroney L., DOnghia M., Giuliani B., Criscuolo E., Castelli M., Clementi N., Clementi M., Mancini N., Bonaldi T., Gustincich S., Leonardi T., Tartaglia G., Nicassio F.
								Discovering host protein interactions specific for SARS-CoV-2 RNA genome
								Molecular Therapy - Nucleic Acids
								
							2023
								Lattanzi G., Strati F., Diaz-Basabe A., Perillo F., Amoroso C., Protti G., Rita Giuffre M., Iachini L., Baeri A., Baldari L., Cassinotti E., Ghidini M., Galassi B., Lopez G., Noviello D., Porretti L., Trombetta E., Messuti E., Mazzarella L., Iezzi G., Nicassio F., Granucci F., Vecchi M., Caprioli F., Facciotti F.
								iNKT cell-neutrophil crosstalk promotes colorectal cancer pathogenesis
								Mucosal Immunology, vol. 16, (no. 3), pp. 326-340